Voxels, meshes, streamlines and connectomes

Voxel-based volumes and triangle-based meshes can exist together in the same scene. NiiVue considers connectomes as a special class of meshes.

from ipyniivue import NiiVue

nv = NiiVue()

nv.load_volumes([{"path": "../images/mni152.nii.gz"}])
nv.load_meshes([
    {"path": "../images/dpsv.trx"},
    {"path": "../images/BrainMesh_ICBM152.lh.mz3", "rgba255": [255, 128, 64, 255]}, 
    {"path": "../images/connectome.jcon"}
     ])

nv.set_clip_plane(-0.1, 270, 0)
nv.opts.mesh_xray = 0.02
nv